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  • × author_ss:"He, X."
  1. Ling, X.; Jiang, J.; He, X.; Mei, Q.; Zhai, C.; Schatz, B.: Generating gene summaries from biomedical literature : a study of semi-structured summarization (2007) 0.00 
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    Abstract
    Most knowledge accumulated through scientific discoveries in genomics and related biomedical disciplines is buried in the vast amount of biomedical literature. Since understanding gene regulations is fundamental to biomedical research, summarizing all the existing knowledge about a gene based on literature is highly desirable to help biologists digest the literature. In this paper, we present a study of methods for automatically generating gene summaries from biomedical literature. Unlike most existing work on automatic text summarization, in which the generated summary is often a list of extracted sentences, we propose to generate a semi-structured summary which consists of sentences covering specific semantic aspects of a gene. Such a semi-structured summary is more appropriate for describing genes and poses special challenges for automatic text summarization. We propose a two-stage approach to generate such a summary for a given gene - first retrieving articles about a gene and then extracting sentences for each specified semantic aspect. We address the issue of gene name variation in the first stage and propose several different methods for sentence extraction in the second stage. We evaluate the proposed methods using a test set with 20 genes. Experiment results show that the proposed methods can generate useful semi-structured gene summaries automatically from biomedical literature, and our proposed methods outperform general purpose summarization methods. Among all the proposed methods for sentence extraction, a probabilistic language modeling approach that models gene context performs the best.
    Type
    a
  2. Aldebei, K.; He, X.; Jia, W.; Yeh, W.: SUDMAD: Sequential and unsupervised decomposition of a multi-author document based on a hidden markov model (2018) 0.00 
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    Abstract
    Decomposing a document written by more than one author into sentences based on authorship is of great significance due to the increasing demand for plagiarism detection, forensic analysis, civil law (i.e., disputed copyright issues), and intelligence issues that involve disputed anonymous documents. Among existing studies for document decomposition, some were limited by specific languages, according to topics or restricted to a document of two authors, and their accuracies have big room for improvement. In this paper, we consider the contextual correlation hidden among sentences and propose an algorithm for Sequential and Unsupervised Decomposition of a Multi-Author Document (SUDMAD) written in any language, disregarding topics, through the construction of a Hidden Markov Model (HMM) reflecting the authors' writing styles. To build and learn such a model, an unsupervised, statistical approach is first proposed to estimate the initial values of HMM parameters of a preliminary model, which does not require the availability of any information of author's or document's context other than how many authors contributed to writing the document. To further boost the performance of this approach, a boosted HMM learning procedure is proposed next, where the initial classification results are used to create labeled training data to learn a more accurate HMM. Moreover, the contextual relationship among sentences is further utilized to refine the classification results. Our proposed approach is empirically evaluated on three benchmark datasets that are widely used for authorship analysis of documents. Comparisons with recent state-of-the-art approaches are also presented to demonstrate the significance of our new ideas and the superior performance of our approach.
    Type
    a
  3. He, X.; Cai, D.; Liu, H.; Ma, W.Y.: Locality preserving indexing for document representation (2004) 0.00 
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    Type
    a

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