-
Suakkaphong, N.; Zhang, Z.; Chen, H.: Disease named entity recognition using semisupervised learning and conditional random fields (2011)
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- Abstract
- Information extraction is an important text-mining task that aims at extracting prespecified types of information from large text collections and making them available in structured representations such as databases. In the biomedical domain, information extraction can be applied to help biologists make the most use of their digital-literature archives. Currently, there are large amounts of biomedical literature that contain rich information about biomedical substances. Extracting such knowledge requires a good named entity recognition technique. In this article, we combine conditional random fields (CRFs), a state-of-the-art sequence-labeling algorithm, with two semisupervised learning techniques, bootstrapping and feature sampling, to recognize disease names from biomedical literature. Two data-processing strategies for each technique also were analyzed: one sequentially processing unlabeled data partitions and another one processing unlabeled data partitions in a round-robin fashion. The experimental results showed the advantage of semisupervised learning techniques given limited labeled training data. Specifically, CRFs with bootstrapping implemented in sequential fashion outperformed strictly supervised CRFs for disease name recognition. The project was supported by NIH/NLM Grant R33 LM07299-01, 2002-2005.
- Source
- Journal of the American Society for Information Science and Technology. 62(2011) no.4, S.727-737
-
Zhu, B.; Chen, H.: Validating a geographical image retrieval system (2000)
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- Abstract
- This paper summarizes a prototype geographical image retrieval system that demonstrates how to integrate image processing and information analysis techniques to support large-scale content-based image retrieval. By using an image as its interface, the prototype system addresses a troublesome aspect of traditional retrieval models, which require users to have complete knowledge of the low-level features of an image. In addition we describe an experiment to validate against that of human subjects in an effort to address the scarcity of research evaluating performance of an algorithm against that of human beings. The results of the experiment indicate that the system could do as well as human subjects in accomplishing the tasks of similarity analysis and image categorization. We also found that under some circumstances texture features of an image are insufficient to represent an geographic image. We believe, however, that our image retrieval system provides a promising approach to integrating image processing techniques and information retrieval algorithms
- Source
- Journal of the American Society for Information Science. 51(2000) no.7, S.625-634
-
Chen, H.; Shankaranarayanan, G.; She, L.: ¬A machine learning approach to inductive query by examples : an experiment using relevance feedback, ID3, genetic algorithms, and simulated annealing (1998)
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- Abstract
- Information retrieval using probabilistic techniques has attracted significant attention on the part of researchers in information and computer science over the past few decades. In the 1980s, knowledge-based techniques also made an impressive contribution to 'intelligent' information retrieval and indexing. More recently, information science researchers have tfurned to other newer inductive learning techniques including symbolic learning, genetic algorithms, and simulated annealing. These newer techniques, which are grounded in diverse paradigms, have provided great opportunities for researchers to enhance the information processing and retrieval capabilities of current information systems. In this article, we first provide an overview of these newer techniques and their use in information retrieval research. In order to femiliarize readers with the techniques, we present 3 promising methods: the symbolic ID3 algorithm, evolution-based genetic algorithms, and simulated annealing. We discuss their knowledge representations and algorithms in the unique context of information retrieval
- Source
- Journal of the American Society for Information Science. 49(1998) no.8, S.693-705
-
Chen, H.; Zhang, Y.; Houston, A.L.: Semantic indexing and searching using a Hopfield net (1998)
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- Abstract
- Presents a neural network approach to document semantic indexing. Reports results of a study to apply a Hopfield net algorithm to simulate human associative memory for concept exploration in the domain of computer science and engineering. The INSPEC database, consisting of 320.000 abstracts from leading periodical articles was used as the document test bed. Benchmark tests conformed that 3 parameters: maximum number of activated nodes; maximum allowable error; and maximum number of iterations; were useful in positively influencing network convergence behaviour without negatively impacting central processing unit performance. Another series of benchmark tests was performed to determine the effectiveness of various filtering techniques in reducing the negative impact of noisy input terms. Preliminary user tests conformed expectations that the Hopfield net is potentially useful as an associative memory technique to improve document recall and precision by solving discrepancies between indexer vocabularies and end user vocabularies
- Source
- Journal of information science. 24(1998) no.1, S.3-18
-
Marshall, B.; McDonald, D.; Chen, H.; Chung, W.: EBizPort: collecting and analyzing business intelligence information (2004)
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- Abstract
- To make good decisions, businesses try to gather good intelligence information. Yet managing and processing a large amount of unstructured information and data stand in the way of greater business knowledge. An effective business intelligence tool must be able to access quality information from a variety of sources in a variety of forms, and it must support people as they search for and analyze that information. The EBizPort system was designed to address information needs for the business/IT community. EBizPort's collection-building process is designed to acquire credible, timely, and relevant information. The user interface provides access to collected and metasearched resources using innovative tools for summarization, categorization, and visualization. The effectiveness, efficiency, usability, and information quality of the EBizPort system were measured. EBizPort significantly outperformed Brint, a business search portal, in search effectiveness, information quality, user satisfaction, and usability. Users particularly liked EBizPort's clean and user-friendly interface. Results from our evaluation study suggest that the visualization function added value to the search and analysis process, that the generalizable collection-building technique can be useful for domain-specific information searching an the Web, and that the search interface was important for Web search and browse support.
- Source
- Journal of the American Society for Information Science and Technology. 55(2004) no.10, S.873-891
-
Hu, P.J.-H.; Hsu, F.-M.; Hu, H.-f.; Chen, H.: Agency satisfaction with electronic record management systems : a large-scale survey (2010)
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- Abstract
- We investigated agency satisfaction with an electronic record management system (ERMS) that supports the electronic creation, archival, processing, transmittal, and sharing of records (documents) among autonomous government agencies. A factor model, explaining agency satisfaction with ERMS functionalities, offers hypotheses, which we tested empirically with a large-scale survey that involved more than 1,600 government agencies in Taiwan. The data showed a good fit to our model and supported all the hypotheses. Overall, agency satisfaction with ERMS functionalities appears jointly determined by regulatory compliance, job relevance, and satisfaction with support services. Among the determinants we studied, agency satisfaction with support services seems the strongest predictor of agency satisfaction with ERMS functionalities. Regulatory compliance also has important influences on agency satisfaction with ERMS, through its influence on job relevance and satisfaction with support services. Further analyses showed that satisfaction with support services partially mediated the impact of regulatory compliance on satisfaction with ERMS functionalities, and job relevance partially mediated the influence of regulatory compliance on satisfaction with ERMS functionalities. Our findings have important implications for research and practice, which we also discuss.
- Source
- Journal of the American Society for Information Science and Technology. 61(2010) no.12, S.2559-2574
-
Chen, H.: Intelligence and security informatics : Introduction to the special topic issue (2005)
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- Abstract
- Making the Nation Safer: The Role of Science and Technology in Countering Terrorism The commitment of the scientific, engineering, and health communities to helping the United States and the world respond to security challenges became evident after September 11, 2001. The U.S. National Research Council's report an "Making the Nation Safer: The Role of Science and Technology in Countering Terrorism," (National Research Council, 2002, p. 1) explains the context of such a new commitment: Terrorism is a serious threat to the Security of the United States and indeed the world. The vulnerability of societies to terrorist attacks results in part from the proliferation of chemical, biological, and nuclear weapons of mass destruction, but it also is a consequence of the highly efficient and interconnected systems that we rely an for key services such as transportation, information, energy, and health care. The efficient functioning of these systems reflects great technological achievements of the past century, but interconnectedness within and across systems also means that infrastructures are vulnerable to local disruptions, which could lead to widespread or catastrophic failures. As terrorists seek to exploit these vulnerabilities, it is fitting that we harness the nation's exceptional scientific and technological capabilities to Counter terrorist threats. A committee of 24 of the leading scientific, engineering, medical, and policy experts in the United States conducted the study described in the report. Eight panels were separately appointed and asked to provide input to the committee. The panels included: (a) biological sciences, (b) chemical issues, (c) nuclear and radiological issues, (d) information technology, (e) transportation, (f) energy facilities, Cities, and fixed infrastructure, (g) behavioral, social, and institutional issues, and (h) systems analysis and systems engineering. The focus of the committee's work was to make the nation safer from emerging terrorist threats that sought to inflict catastrophic damage an the nation's people, its infrastructure, or its economy. The committee considered nine areas, each of which is discussed in a separate chapter in the report: nuclear and radiological materials, human and agricultural health systems, toxic chemicals and explosive materials, information technology, energy systems, transportation systems, Cities and fixed infrastructure, the response of people to terrorism, and complex and interdependent systems. The chapter an information technology (IT) is particularly relevant to this special issue. The report recommends that "a strategic long-term research and development agenda should be established to address three primary counterterrorismrelated areas in IT: information and network security, the IT needs of emergency responders, and information fusion and management" (National Research Council, 2002, pp. 11 -12). The MD in information and network security should include approaches and architectures for prevention, identification, and containment of cyber-intrusions and recovery from them. The R&D to address IT needs of emergency responders should include ensuring interoperability, maintaining and expanding communications capability during an emergency, communicating with the public during an emergency, and providing support for decision makers. The R&D in information fusion and management for the intelligence, law enforcement, and emergency response communities should include data mining, data integration, language technologies, and processing of image and audio data. Much of the research reported in this special issue is related to information fusion and management for homeland security.
- Source
- Journal of the American Society for Information Science and Technology. 56(2005) no.3, S.217-220
-
Chen, H.; Dhar, V.: Cognitive process as a basis for intelligent retrieval system design (1991)
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- Source
- Information processing and management. 27(1991) no.5, S.405-432
-
Chen, H.: Explaining and alleviating information management indeterminism : a knowledge-based framework (1994)
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- Source
- Information processing and management. 30(1994) no.4, S.557-577
-
Jiang, S.; Gao, Q.; Chen, H.; Roco, M.C.: ¬The roles of sharing, transfer, and public funding in nanotechnology knowledge-diffusion networks (2015)
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- Abstract
- Understanding the knowledge-diffusion networks of patent inventors can help governments and businesses effectively use their investment to stimulate commercial science and technology development. Such inventor networks are usually large and complex. This study proposes a multidimensional network analysis framework that utilizes Exponential Random Graph Models (ERGMs) to simultaneously model knowledge-sharing and knowledge-transfer processes, examine their interactions, and evaluate the impacts of network structures and public funding on knowledge-diffusion networks. Experiments are conducted on a longitudinal data set that covers 2 decades (1991-2010) of nanotechnology-related US Patent and Trademark Office (USPTO) patents. The results show that knowledge sharing and knowledge transfer are closely interrelated. High degree centrality or boundary inventors play significant roles in the network, and National Science Foundation (NSF) public funding positively affects knowledge sharing despite its small fraction in overall funding and upstream research topics.
- Date
- 27. 4.2015 10:29:08
- Source
- Journal of the Association for Information Science and Technology. 66(2015) no.5, S.1017-1029
-
Ramsey, M.C.; Chen, H.; Zhu, B.; Schatz, B.R.: ¬A collection of visual thesauri for browsing large collections of geographic images (1999)
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- Date
- 21. 7.1999 13:48:29
- Source
- Journal of the American Society for Information Science. 50(1999) no.9, S.826-834
-
Chen, H.: ¬An analysis of image queries in the field of art history (2001)
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- Abstract
- Chen arranged with an Art History instructor to require 20 medieval art images in papers received from 29 students. Participants completed a self administered presearch and postsearch questionnaire, and were interviewed after questionnaire analysis, in order to collect both the keywords and phrases they planned to use, and those actually used. Three MLIS student reviewers then mapped the queries to Enser and McGregor's four categories, Jorgensen's 12 classes, and Fidel's 12 feature data and object poles providing a degree of match on a seven point scale (one not at all to 7 exact). The reviewers give highest scores to Enser and McGregor;'s categories. Modifications to both the Enser and McGregor and Jorgensen schemes are suggested
- Source
- Journal of the American Society for Information Science and technology. 52(2001) no.3, S.260-273
-
Chung, W.; Chen, H.: Browsing the underdeveloped Web : an experiment on the Arabic Medical Web Directory (2009)
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- Date
- 22. 3.2009 17:57:50
- Source
- Journal of the American Society for Information Science and Technology. 60(2009) no.3, S.595-607
-
Leroy, G.; Chen, H.: Genescene: an ontology-enhanced integration of linguistic and co-occurrence based relations in biomedical texts (2005)
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- Date
- 22. 7.2006 14:26:01
- Source
- Journal of the American Society for Information Science and Technology. 56(2005) no.5, S.457-468
-
Zheng, R.; Li, J.; Chen, H.; Huang, Z.: ¬A framework for authorship identification of online messages : writing-style features and classification techniques (2006)
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- Date
- 22. 7.2006 16:14:37
- Source
- Journal of the American Society for Information Science and Technology. 57(2006) no.3, S.378-393
-
Hu, D.; Kaza, S.; Chen, H.: Identifying significant facilitators of dark network evolution (2009)
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- Date
- 22. 3.2009 18:50:30
- Source
- Journal of the American Society for Information Science and Technology. 60(2009) no.4, S.655-665
-
Chen, H.: Knowledge-based document retrieval : framework and design (1992)
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- Source
- Journal of information science. 18(1992), S.293-314
-
Carmel, E.; Crawford, S.; Chen, H.: Browsing in hypertext : a cognitive study (1992)
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- Source
- IEEE transactions on systems, man and cybernetics. 22(1992) no.5, S.865-884
-
Marshall, B.; Chen, H.; Kaza, S.: Using importance flooding to identify interesting networks of criminal activity (2008)
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- Abstract
- Effectively harnessing available data to support homeland-security-related applications is a major focus in the emerging science of intelligence and security informatics (ISI). Many studies have focused on criminal-network analysis as a major challenge within the ISI domain. Though various methodologies have been proposed, none have been tested for usefulness in creating link charts. This study compares manually created link charts to suggestions made by the proposed importance-flooding algorithm. Mirroring manual investigational processes, our iterative computation employs association-strength metrics, incorporates path-based node importance heuristics, allows for case-specific notions of importance, and adjusts based on the accuracy of previous suggestions. Interesting items are identified by leveraging both node attributes and network structure in a single computation. Our data set was systematically constructed from heterogeneous sources and omits many privacy-sensitive data elements such as case narratives and phone numbers. The flooding algorithm improved on both manual and link-weight-only computations, and our results suggest that the approach is robust across different interpretations of the user-provided heuristics. This study demonstrates an interesting methodology for including user-provided heuristics in network-based analysis, and can help guide the development of ISI-related analysis tools.
- Source
- Journal of the American Society for Information Science and Technology. 59(2008) no.13, S.2099-2114
-
Chau, M.; Wong, C.H.; Zhou, Y.; Qin, J.; Chen, H.: Evaluating the use of search engine development tools in IT education (2010)
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- Abstract
- It is important for education in computer science and information systems to keep up to date with the latest development in technology. With the rapid development of the Internet and the Web, many schools have included Internet-related technologies, such as Web search engines and e-commerce, as part of their curricula. Previous research has shown that it is effective to use search engine development tools to facilitate students' learning. However, the effectiveness of these tools in the classroom has not been evaluated. In this article, we review the design of three search engine development tools, SpidersRUs, Greenstone, and Alkaline, followed by an evaluation study that compared the three tools in the classroom. In the study, 33 students were divided into 13 groups and each group used the three tools to develop three independent search engines in a class project. Our evaluation results showed that SpidersRUs performed better than the two other tools in overall satisfaction and the level of knowledge gained in their learning experience when using the tools for a class project on Internet applications development.
- Source
- Journal of the American Society for Information Science and Technology. 61(2010) no.2, S.288-299
