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  • × author_ss:"Song, M."
  • × theme_ss:"Informetrie"
  1. Song, M.; Kang, K.; An, J.Y.: Investigating drug-disease interactions in drug-symptom-disease triples via citation relations (2018) 0.06 
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    Abstract
    With the growth in biomedical literature, the necessity of extracting useful information from the literature has increased. One approach to extracting biomedical knowledge involves using citation relations to discover entity relations. The assumption is that citation relations between any two articles connect knowledge entities across the articles, enabling the detection of implicit relationships among biomedical entities. The goal of this article is to examine the characteristics of biomedical entities connected via intermediate entities using citation relations aided by text mining. Based on the importance of symptoms as biomedical entities, we created triples connected via citation relations to identify drug-disease pairs with shared symptoms as intermediate entities. Drug-disease interactions built via citation relations were compared with co-occurrence-based interactions. Several types of analyses were adopted to examine the properties of the extracted entity pairs by comparing them with drug-disease interaction databases. We attempted to identify the characteristics of drug-disease pairs through citation relations in association with biomedical entities. The results showed that the citation relation-based approach resulted in diverse types of biomedical entities and preserved topical consistency. In addition, drug-disease pairs identified only via citation relations are interesting for clinical trials when they are examined using BITOLA.
    Date
    1.11.2018 18:19:22
  2. Song, M.; Kim, S.Y.; Lee, K.: Ensemble analysis of topical journal ranking in bioinformatics (2017) 0.02 
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    Abstract
    Journal rankings, frequently determined by the journal impact factor or similar indices, are quantitative measures for evaluating a journal's performance in its discipline, which is presently a major research thrust in the bibliometrics field. Recently, text mining was adopted to augment journal ranking-based evaluation with the content analysis of a discipline taking a time-variant factor into consideration. However, previous studies focused mainly on a silo analysis of a discipline using either citation-or content-oriented approaches, and no attempt was made to analyze topical journal ranking and its change over time in a seamless and integrated manner. To address this issue, we propose a journal-time-topic model, an extension of Dirichlet multinomial regression, which we applied to the field of bioinformatics to understand journal contribution to topics in a field and the shift of topic trends. The journal-time-topic model allows us to identify which journals are the major leaders in what topics and the manner in which their topical focus. It also helps reveal an interesting distinct pattern in the journal impact factor of high- and low-ranked journals. The study results shed a new light for understanding topic specific journal rankings and shifts in journals' concentration on a subject.

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